species:   Scscl
pid:       PID1533
parent:    Ssc-milR-9
paralog:   
locus:     NW_001820801.1:1973-2047
matures:   ['UAGCCGGGCUAUUUAGCAGGUU', 'UCCCUCUAAGAAGCCAGCGACCAGC']
srr:       SRR12527896
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527896.cram NW_001820801.1:1973-2047

998 out of bounds
146 alignments
1 proper strand
1 stranded perfect matches

 *************************                        ************************ 
UUGAGCCGAUAGUCCCUCUAAGAAGCCAGCGACCAGCCAAAGCUAGCCGGGCUAUUUAGCAGGUUAAGGUCUCGU
..(((((..(((.((..(((((.((((..((.(.(((....))).).)))))).)))))..))))).)).)))..
-------------------------------------------UAGCCGGGCUAUUUAGCAGGUU---------- l=22 a=0 c
------------UCCCUCUAAGAAGCCAGCGACCAGC-------------------------------------- l=25 a=0 c*
----------------------------------------------------UAUUUAGCAGGUUAAGGUCUCG- l=22 a=1 ma
---AGCCGAUAGUCCCUCUAAGAAGC------------------------------------------------- l=23 a=0 ma*

----------------------------------------------------UAUUUAGCAGGUUAAGGUCUCG- l=22 a=1 (ma)

mb-01011
ax-1001011
ku-01
ss-100111001100
fn-101
